PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g006380.1
Common NameMTR_2g006380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 457aa    MW: 52062 Da    PI: 7.3738
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g006380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.7e-17134225999
                      HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       + +++ +++p+ +ae++    g++   s+ l ++d +g++W++ +      ++ ++ t+ W +Fv+ ++L++gD vvF+  ++s+++l+v+++
  Medtr2g006380.1 134 TNVSKHAFYIPRFCAENMfpplGME--VSQHLLVTDVHGEVWKFHHVChGFAKRNVFYTSEWASFVERKKLDVGDAVVFM--KNSTGKLFVGIR 223
                      4556667****8888666**76444..5668***************77344444488899********************..779********* PP

                      -S CS
               B3  98 rk 99 
                      rk
  Medtr2g006380.1 224 RK 225
                      98 PP

2Auxin_resp471.1e-16242316182
       Auxin_resp   1 aahaastksvFevvYnPr.astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      a++ a+++++Fe+vY+Pr   + +Fvv  + v +++k+++ + mR+km+  t+ ss++ ++Gt++ vs +++       Wr+L
  Medtr2g006380.1 242 AVKLAEENKPFEIVYYPRgDDWCDFVVDGNIVDESMKIQWNPRMRVKMK--TDKSSRIPYQGTITTVSRTSN------LWRML 316
                      678999************4469************************997..7899*************9655......66666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-20126231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17126229IPR015300DNA-binding pseudobarrel domain
CDDcd100179.17E-11126224No hitNo description
PROSITE profilePS5086310.983126226IPR003340B3 DNA binding domain
SMARTSM010196.1E-9127226IPR003340B3 DNA binding domain
PfamPF023626.9E-15132225IPR003340B3 DNA binding domain
PfamPF065075.6E-14242315IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSLNQYHHQQ QQQPSHVHPQ IWQTCTGAAV QIPKLHSRVY YFPQGHLEHA SSSSSNAYIH  60
SLDLQRFRPF TICIISAVDL LADPHTDEVF AKLLLTPVTN NSCVQDPHEV PNCSNDDDVC  120
DEVIDSFTRI LALTNVSKHA FYIPRFCAEN MFPPLGMEVS QHLLVTDVHG EVWKFHHVCH  180
GFAKRNVFYT SEWASFVERK KLDVGDAVVF MKNSTGKLFV GIRRKDAAEQ KKDELEKAVM  240
EAVKLAEENK PFEIVYYPRG DDWCDFVVDG NIVDESMKIQ WNPRMRVKMK TDKSSRIPYQ  300
GTITTVSRTS NLWRMLQVNW DEFQISQISR RVSPWCVELH KPAPTPFPQT KKFRTTQSSA  360
QLSDKKETLL NDDGFPVDIQ RVRHDLVSIS GPIHSHIILN SSETKFPATH NCNTKNDSDG  420
SIMLFGKIIQ PHVSNFHNSH IKGDDGYKSC GFGVKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-391733851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343220.0AC134322.25 Medicago truncatula clone mth2-17i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592986.20.0auxin response factor
TrEMBLG7INQ90.0G7INQ9_MEDTR; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-72auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]